Conditions of use

Nutil is an integral part of the QUINT workflow, and is developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences, University of Oslo, Norway.

Authors: Nicolaas E Groeneboom, Sharon C. Yates, Maja A. Puchades, Jan G. Bjaalie.

Licence: GNU General Public License version 3.

Acknowledgements: Nutil was developed with support from the EBRAINS infrastructure, and funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA).

How to cite

  • Nutil: Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Postprocessing Toolbox for Histological Rodent Brain Section Images. Front. Neuroinform. 14:37. doi: 10.3389/fninf.2020.00037

  • QUINT workflow: Yates SC, Groeneboom NE, Coello C, Lichtenthaler SF, Kuhn P-H, Demuth H-U, HartlageRübsamen M, Roßner S, Leergaard T, Kreshuk A, Puchades MA and Bjaalie JG (2019) QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. doi: 10.3389/fninf.2019.00075.

How to cite the reference atlases

  • Allen Mouse Brain Atlas: © 2004 Allen Institute for Brain Science. Allen Mouse Brain Atlas. Available here.

  • Waxholm Space atlas of the Sprague Dawley rat brain version 2 , 3 and 4: RRID: SCR_017124; Papp et al., NeuroImage 97, 374-386, 2014; Papp et al., NeuroImage 105, 561–562, 2015; Kjonigsen et al., NeuroImage 108, 441-449, 2015; Osen et al., NeuroImage 199, 38-56, 2019; Kleven et al., in preparation.

For reuse of the Waxholm Space atlas of the Sprague Dawley rat brain, see the citation policy.