Nutil: Neuroscience Image Processing and Analysis Utilities
Nutil documentation
- What is Nutil?
- Installation
- Acknowledgements
- Contact us
- FAQ
- I can’t open the application. “Windows protected your PC”
- Nutil shuts down during a run and/or generates corrupt files
- Can I run Nutil via the command line for batch processing?
- Transform: “Maximum TIFF file size exceeded”, what do I do?
- Quantifier: There are no object counts in the reports (N/A)?
- Quantifier: The CSV reports don’t open correctly in Microsoft Excel
- Quantifier: I don’t understand what to enter for the Pixel Scale?
- Quantifier: How do I calculate the Pixel Scale of images that have been downscaled?
- Quantifier: The QUINT coordinates do not match Allen Common Coordinate Framework coordinates. What’s going on?
- Quantifier: The QUINT coordinates do not match the WHS coordinate system. What going on?
- Quantifier: How do the QUINT coordinates for mouse (Allen CCFv3) relate to Bregma?
- Quantifier: How do I assign reference atlas regions to the coordinates extracted by Nutil?
- Quantifier: Is it possible to extract coordinates corresponding to the the centroid of my features-of-interest?
- Quantifier: Can I use my own atlas in Nutil?
- Warnings and error messages are confusing. What do they mean?
Pre-processing operations